The Play-Offs produced 56 goals in total.
Back to the match on Sunday, Baroka took the lead in the 17th minute through enterprising play by Khotso Chabeli.
The industrious playmaker got the better of the Maluti defence, having dribbled his way past a number of players before planting a powerful shot into the right-hand corner of the opposition goal to put Baroka in the lead.
Baroka doubled their lead in the 37th minute through Khunadi Nkoana.
Maluti came from the break looking a changed side and looking for a goal that would bring them back into the match.
Fifteen minutes into the half, Maluti made two more changes to liven up their squad and were rewarded shortly after when Malefetsane Rankanti took a long-range shot that caught Baroka's outstanding keeper Veli Mothwa off guard for what was ultimately a consolation goal for the Free State side.
Baroka were reduced to 10-man with three minutes to go after Sifiso Mbhele was sent for a dangerous tackle and despite Maluti sensing some reward the match ended with Baroka being crowned champions.
Coach of the Tournament: Sello Chokoe (Baroka).
Goalkeeper of the Tournament: Veli Mothwa (Baroka).
Player of the Tournament: Khunadi Nkoana (Baroka).
Top Goalscorers (6 goals each): Nkoana (Baroka) and Collen Zimba (Vardos).